practical assignments

Module 7: Molecular Evolution and Phylogenetics

Session 1 – Historical perspective and mechanisms of molecular evolution and speciation

practical_day1_ws

finches_images

galapagos_map

lack_beak_depth_distribs

Session 2 – Traits, phylogenies, evolutionary models and divergence times

practical-day-2-ws

seven_seqs

*please note that the seven_seqs file was originally a .fa file and has been saved as a .txt file (should work the same)

Session 3 – Tree building with distance matrix methods. Parsimony approaches

practical_day3-ws

seven_seqs

*please note that the seven_seqs file was originally a .fa file and has been saved as a .txt file (should work the same)

Session 4 – Tree building with maximum likelihood approaches. Bayesian viewpoint. Branch support measures

practical_day4-ws

smaller2_mit12_58seqs_strict

*please note that the smaller2_mit12_58seqs_strict file was originally a .phy file and has been saved as a .txt file (should work the same)