Course laptop software list

Aidan Budd
JalView “recent” (I can’t see version numbers on their download page) –
http://www.jalview.org/Download – Run OK using the JNLP file in desktop

Miguel Andrade
Chimera 1.9 https://www.cgl.ucsf.edu/chimera/download.html – OK Installed, link in desktop

Scooter Morris and Nadya Doncheva
Cytoscape http://www.cytoscape.org/download.html – OK Installed, link in desktop
Cytoscape 3.1.1 together with the following Apps

  • WikiPathways – OK
  • AgilentLiteratureSearch – Warning: something about not able to create user folder, however it appears installed
  • structureViz2 – OK
  • jActiveModules – OK
  • BiNGO – OK
  • ClueGO – OK
  • clusterMaker2 – OK
  • PathExplorer – OK
  • RINalyzer – OK

Aidan Budd
ClustalX 2.1 http://www.clustal.org/download/current/  – OK Installed, link in desktop

Marco Punta
VMD
http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD  – OK Installed, link in desktop

Adobe Flash (so that STRING http://string-db.org/ can display its networks OK e.g. click through from example  #1 until you get a network to view)  – OK tested in ie, firefox & chrome

Chrome   – OK Installed, link in desktop

Firefox  – OK Installed, link in desktop

A “simple” text editor  – OK notepad++ Installed, link in desktop

Skype   – OK Installed

OpenOffice (or some other free wordprocesor/spreadsheet) – QUESTION: The machine has Office 2010 installed… do we need also Open Office??

Calculator – OK buit-in windows calculator

Java Virtual Machine: 1.7.0_67

Team Viewer – OK